After analysis, I found b needing to be corrected for (simply Clustal W cannot recognize reverse compliment)
>/tmp/outseq.input.22191 [Unknown form], reverse complement, 698 bases, 1F97 checksum.
CCCACCAGTTTTGTACCGTCGGCACTTTTGTAATCGATCTGCTCGGTCTT
GATCGCTGCCTGGCCGAGGCCAGTCAGGCCCATCATGATCATTGCAATCC
ACAAGCGCATGTTCAGCTCCTTCTTGGGGGGGGGGTGCAGCACGAATGTC
AAAAGATAGCCGATTCTGCCGCCTGCGGCGCGCACGACTGTTCAGCGCCG
GTTCATCGCGTGTTCAGTCGGGGTTCAGCCCGGCGCGATTACTGTTGAGC
CGTACCTTGACAGCGTCCCCGAGCGCAAAAGGAGTCGAAATGTTGAATCT
CAACAAGTTTTTCCTGGCCTTGGCTTTTCTGGGTGGCAGTGCGGCGGCGC
AGGCGGGCGATGGCAGGCTTGACGTGGCCCGCATCGAGTTCGGCAAGACC
AGTGAAAGGTTCGACGACGCCAACAGCTGGGGGCATGCGCTTAATGAGCA
GGCGCGATCCAATGTGTCGGTGGGGACGCTTTATTCTCCGCCGGTTTACG
GCAGTCTGACGGGGACTCACAATGGCGTGCCTGTCAGCCGCGAAATCCTG
CTGGGCAGCTATGATGTGACACAGCCTGTGCCCGTCAGCGCCCGCCTGTT
GAGTACTGAGGCGACGATGTCGTTTCAATCTTTGTCTTGAGGCTGTGATT
GTGCCTGGGAGAGCTGCATGAAGTTGTTGGTAGTCGAGGATGAAGCGC
Corrected B Clustal W Analysis:
Raw input using FASTA>sequence ref
AAAACACCTGCATGTCTGACCACGAGCTCTGGTCCGCGGCCTTGTCGTAGCCGATGTCCGGGCCGCCGTGTTCGCCGTGGCTCAGGCGGTCGGCGTCGGGGTTGGTGAAGCCGTGTTTGGCGCCGTCGATGCTGACGAATTTATAGTCTGCCTTGGCGTCGTCCATTTCCTTCTTGAAGGCGGCGACGTTCTCCGGTGTGACCATGCTGTCCTTGGCACCATGCTCGACCAGCATTGGCACTTTGATGCCCGGTTTGGCCGGGCTATTGGTGAACAGTGCGCCGTGGAAGCTGACCACGCCCAGCAACGGTTCGCCGCGACGGGCCGCGTCCAGCACGATCTTGCCGCCGAAGCAGTAACCCACCGCTGCAATCTTTTTCGGGTCGGTCTGCGGTTGTTTCTTCAATTGCTCAAGCCCGGCATCAAAGCGCTTGTCGGCCGCATCGCTGTCCTTGAGCGCGGCCTGCATGAAGGCCATCGCGTCTTTCGGGTGCTCGGTGTTCTTGCCTTCGCCGTACATGTCGATGGCCATGGCGCTGTAACCCAGTGCCGCCAGATCACGGGCGCGGCGCTTGGCGTAGTCGTTCAGGCCCCACCACTCGTGAACCACCAGCACACCGGGGCGCGGGCCTTTTACGGCGTCGTCGTAAGCGTAGTAACCCACCAGTTTTGTACCGTCGGCACTTTTGTAATCGATCTGCTCGGTCTTGATCGCTGCCTGGCCGAGGCCAGTCAGGCCCATCATGATCATTGCAATCCACAAGCGCATGTTCAGCTCCTTCTTGGGGGGGGGGTGCAGCACGAATGTCAAAAGATAGCCGATTCTGCCGCCTGCGGCGCGCACGACTGTTCAGCGCCGGTTCATCGCGTGTTCAGTCGGGGTTCAGCCCGGCGCGATTACTGTTGAGCCGTACCTTGACAGCGTCCCCGAGCGCAAAAGGAGTCGAAATGTTGAATCTCAACAAGTTTTTCCTGGCCTTGGCTTTTCTGGGTGGCAGTGCGGCGGCGCAGGCGGGCGATGGCAGGCTTGACGTGGCCCGCATCGAGTTCGGCAAGACCAGTGAAAGGTTCGACGACGCCAACAGCTGGGGGCATGCGCTTAATGAGCAGGCGCGATCCAATGTGTCGGTGGGGACGCTTTATTCTCCGCCGGTTTACGGCAGTCTGACGGGGACTCACAATGGCGTGCCTGTCAGCCGCGAAATCCTGCTGGGCAGCTATGATGTGACACAGCCTGTGCCCGTCAGCGCCCGCCTGTTGAGTACTGAGGCGACGATGTCGTTTCAATCTTTGTCTTGAGGCTGTGATTGTGCCTGGGAGAGCTGCATGAAGTTGTTGGTAGTCGAGGATGAAGCGC
>sequence premixa
TGTCTGACCACAAGCTCTGGTCCGCGTGCCTTGTCGTAGCCGATGTCCGGGCCGCCGTGTTCGCCGTGGTGTCAGGCGGTCGGCGTCCGGGTTGGTGAAGCCGTGTTTGGCGCCGTCGATGCTGACGAATTTATAGTCTGCCTTGGCGTCATCCATTTCCTTCTTGAAGGCGGCGACGTTCTCCGGTGTGACCATGCTGTCCTTGGCACCATGCTCGACCAACATTGGCACTTTGATGCCCGGTTTGGCCGGGCTATTGGTGAACAGTGCGCCGTGCAAGCTGACCACGCCCAGCAACGGTTCGCCGCGACGGGCCACGTCCAGCACGATCTTGCCGCCGAAGCAGTAACCCACCGCTGCAATCTTTTTCGGGTCGGTCTGCGGTTGTTTCTTCAATTGCTCAAGCCCGGCATCAAAGCGCTTGTCGGCCGCATCGCTGTCCTTGAGCGCGGCCTGCATGAATGCCATCGCGTCTTTCGGGTGCTCGGTGTTCTTGCCTTCCCCGTACATGTCAATGGCCATGGGGCTGTAACCCAATGCCGCCAGATCACAGGCGCGGCGCTTGGCGTAATCCTTCAGGCCCCACCACTCGTGAACCACCAGCACACCGGGGCGCGGGCCTTTTACGGCGTCGTCGTAAGCGTACTAACCCACCAGTTTTGTACCGTCGTCACTTTTGTAATCGATCTGCTCGGTCTAGATCGCTGCCTGGCCGAGGCCAGTCAGGCCCATCATGATCATTGCAATCCACGAAGCACATGTTCAGCTCCTTTCTTGGGG
>sequence premixb
CCCACCAGTTTTGTACCGTCGGCACTTTTGTAATCGATCTGCTCGGTCTTGATCGCTGCCTGGCCGAGGCCAGTCAGGCCCATCATGATCATTGCAATCCACAAGCGCATGTTCAGCTCCTTCTTGGGGGGGGGGTGCAGCACGAATGTCAAAAGATAGCCGATTCTGCCGCCTGCGGCGCGCACGACTGTTCAGCGCCGGTTCATCGCGTGTTCAGTCGGGGTTCAGCCCGGCGCGATTACTGTTGAGCCGTACCTTGACAGCGTCCCCGAGCGCAAAAGGAGTCGAAATGTTGAATCTCAACAAGTTTTTCCTGGCCTTGGCTTTTCTGGGTGGCAGTGCGGCGGCGCAGGCGGGCGATGGCAGGCTTGACGTGGCCCGCATCGAGTTCGGCAAGACCAGTGAAAGGTTCGACGACGCCAACAGCTGGGGGCATGCGCTTAATGAGCAGGCGCGATCCAATGTGTCGGTGGGGACGCTTTATTCTCCGCCGGTTTACGGCAGTCTGACGGGGACTCACAATGGCGTGCCTGTCAGCCGCGAAATCCTGCTGGGCAGCTATGATGTGACACAGCCTGTGCCCGTCAGCGCCCGCCTGTTGAGTACTGAGGCGACGATGTCGTTTCAATCTTTGTCTTGAGGCTGTGATTGTGCCTGGGAGAGCTGCATGAAGTTGTTGGTAGTCGAGGATGAAGCGC
>sequence premixc
ATCGCTGTCCTTGAGCGCGGCCTGCATGAAGGCCATCGCGTCTTTCGGGTGCTCGGTGTTCTTGCCTTCGCCGTACATGTCGATGGCCATGGCGCTGTAACCCAGTGCCGCCAGATCACGGGCGCGGCGCTTGGCGTAGTCGTTCAGGCCCCACCACTCGTGAACCACCAGCACACCGGGGCGCGGGCCTTTTACGGCGTCGTCGTAAGCGTAGTAACCCACCAGTTTTGTACCGTCGGCACTTTTGTAATCGATCTGCTCGGTCTTGATCGCTGCCTGGCCGAGGCCAGTCAGGCCCATCATGATCATTGCAATCCACAAGCGCATGTTCAGCTCCTTCTTGGGGGGGGGGTGCAGCACGAATGTCAAAAGATAGCCGATTCTGCCGCCTGCGGCGCGCACGACTGTTCAGCGCCGGTTCATCGCGTGTTCAGTCGGGGTTCAGCCCGGCGCGATTACTGTTGAGCCGTACCTTGACAGCGTCCCCGAGCGCAAAAGGAGTCGAAATGTTGAATCTCAACAAGTTTTTCCTGGCCTTGGCTTTTCTGGGTGGCAGTGCGGCGGCGCAGGCGGGCGATGGCAGGCTTGACGTGGCCCGCATCGAGTTCGGCAAGACCAGTGAAAGGTTCGACGACGCCAACAGCTGGGGGCATGCGCTTAATGAGCAGGCGCGATCCAATGTGTCGGTGGGGACGCTTTATTCTCCGCCGGTTTACGGCAGTCTGACGGGGACTCACAATGGCGTGCCTGT
>sequence premixd
GCAGAATCGGCTATCTTTTGACATTCGTGCTGCACCCCCCCCCCAAGAAGGAGCTGAACATGCGCTTGTGGATTGCAATGATCATGATGGGCCTGACTGGCCTCGGCCAGGCAGCGATCAAGACCGAGCAGATCGATTACAAAAGTGCCGACGGTACAAAACTGGTGGGTTACTACGCTTACGACGACGCCGTAAAAGGCCCGCGCCCCGGTGTGCTGGTGGTTCACGAGTGGTGGGGCCTGAACGACTACGCCAAGCGCCGCGCCCGTGATCTGGCGGCACTGGGTTACAGCGCCATGGCCATCGACATGTACGGCGAAGGCAAGAACACCGAGCACCCGAAAGACGCGATGGCCTTCATGCAGGCCGCGCTCAAGGACAGCGATGCGGCCGACAAGCGCTTTGATGCCGGGCTTGAGCAATTGAAGAAACAACCGCAGACCGACCCGAAAAAGATTGCAGCGGTGGGTTACTGCTTCGGCGGCAAGATCGTGCTGGACGCGGCCCGTCGCGGCGAACCGTTGCTGGGCGTGGTCAGCTTCCACGGCGCACTGTTCACCAATAGCCCGGCCAAACCGGGCATCAAAGTGCCAATGCTGGTCGAGCATGGTGCCAAGGACAGCATGGTCACACCGGAGAACGTCGCCGCCTTCAAGAAGGAAATGGACGACGCCAAGGCAGACTATAAATTCGTCAGCATCGACGGCGCCAAACACGGCTTCACCAACCCCGACGCCGACCGCCTGAGCCACGGCGAACACGGCGGCCCGGACAT
CLUSTAL W (1.81) Multiple Sequence Alignments
Sequence type explicitly set to Protein
Sequence format is Pearson
Sequence 1: sequence_ref 1357 aa
Sequence 2: sequence_premixa 780 aa
Sequence 3: sequence_premixb 698 aa
Sequence 4: sequence_premixc 751 aa
Sequence 5: sequence_premixd 779 aa
Start of Pairwise alignments
Aligning...
(Partial alignment)
Sequences (1:2) Aligned. Score: 69.1026
(Partial alignment)
Sequences (1:3) Aligned. Score: 34.5272
(Partial alignment)
Sequences (1:4) Aligned. Score: 56.0586
(Partial alignment)
Sequences (1:5) Aligned. Score: 26.9576
(Partial alignment)
Sequences (2:2) Aligned. Score: 57.8205
(Partial alignment)
Sequences (2:3) Aligned. Score: 25.788
(Partial alignment)
Sequences (2:4) Aligned. Score: 30.4927
(Partial alignment)
Sequences (2:5) Aligned. Score: 25.2888
(Partial alignment)
Sequences (3:2) Aligned. Score: 25.6447
Sequences (3:3) Aligned. Score: 100
(Partial alignment)
Sequences (3:4) Aligned. Score: 75.788
(Partial alignment)
Sequences (3:5) Aligned. Score: 26.2178
(Partial alignment)
Sequences (4:2) Aligned. Score: 43.8083
(Partial alignment)
Sequences (4:3) Aligned. Score: 60.1719
(Partial alignment)
Sequences (4:4) Aligned. Score: 70.0399
(Partial alignment)
Sequences (4:5) Aligned. Score: 25.1664
(Partial alignment)
Sequences (5:2) Aligned. Score: 24.2619
(Partial alignment)
Sequences (5:3) Aligned. Score: 26.5043
(Partial alignment)
Sequences (5:4) Aligned. Score: 23.968
(Partial alignment)
Sequences (5:5) Aligned. Score: 87.163
Guide tree file created: [clustalw.dnd]
Start of Multiple Alignment
There are 4 groups
Aligning...
Group 1: Sequences: 2 Score:15609
Group 2: Sequences: 2 Score:10934
Group 3: Sequences: 4 Score:5203
Group 4: Delayed
Sequence:5 Score:4436
Alignment Score 31313
CLUSTAL-Alignment file created [clustalw.aln]
clustalw.aln
CLUSTAL W (1.81) multiple sequence alignment
sequence_ref AAAACACCTGCATGTCTGACCACGAGCTCTGGTCCGCGG-CCTTGTCGTAGCCGATGTCC
sequence_premixa ------------TGTCTGACCACAAGCTCTGGTCCGCGTGCCTTGTCGTAGCCGATGTCC
sequence_premixb ------------------------------------------------------------
sequence_premixc ------------------------------------------------------------
sequence_premixd ------------------------------------------------------------
sequence_ref GGGCCGCCGTGTTCGCCGTG-GCTCAGGCGGTCGGCGTCGGGGTTGGTGAAGCCGTGTTT
sequence_premixa GGGCCGCCGTGTTCGCCGTGGTGTCAGGCGGTCGGCGTCCGGGTTGGTGAAGCCGTGTTT
sequence_premixb ------------------------------------------------------------
sequence_premixc ------------------------------------------------------------
sequence_premixd ------------------------------------------------------------
sequence_ref GGCGCCGTCGATGCTGACGAATTTATAGTCTGCCTTGGCGTCGTCCATTTCCTTCTTGAA
sequence_premixa GGCGCCGTCGATGCTGACGAATTTATAGTCTGCCTTGGCGTCATCCATTTCCTTCTTGAA
sequence_premixb ------------------------------------------------------------
sequence_premixc ------------------------------------------------------------
sequence_premixd ------------------------------------------------------------
sequence_ref GGCGGCGACGTTCTCCGGTGTGACCATGCTGTCCTTGGCACCATGCTCGACCAGCATTGG
sequence_premixa GGCGGCGACGTTCTCCGGTGTGACCATGCTGTCCTTGGCACCATGCTCGACCAACATTGG
sequence_premixb ------------------------------------------------------------
sequence_premixc ------------------------------------------------------------
sequence_premixd ------------------------------------------------------------
sequence_ref CACTTTGATGCCCGGTTTGGCCGGGCTATTGGTGAACAGTGCGCCGTGGAAGCTGACCAC
sequence_premixa CACTTTGATGCCCGGTTTGGCCGGGCTATTGGTGAACAGTGCGCCGTGCAAGCTGACCAC
sequence_premixb ------------------------------------------------------------
sequence_premixc ------------------------------------------------------------
sequence_premixd ------------------------------------------------------------
sequence_ref GCCCAGCAACGGTTCGCCGCGACGGGCCGCGTCCAGCACGATCTTGCCGCCGAAGCAGTA
sequence_premixa GCCCAGCAACGGTTCGCCGCGACGGGCCACGTCCAGCACGATCTTGCCGCCGAAGCAGTA
sequence_premixb ------------------------------------------------------------
sequence_premixc ------------------------------------------------------------
sequence_premixd ------------------------------------------------------------
sequence_ref ACCCACCGCTGCAATCTTTTTCGGGTCGGTCTGCGGTTGTTTCTTCAATTGCTCAAGCCC
sequence_premixa ACCCACCGCTGCAATCTTTTTCGGGTCGGTCTGCGGTTGTTTCTTCAATTGCTCAAGCCC
sequence_premixb ------------------------------------------------------------
sequence_premixc ------------------------------------------------------------
sequence_premixd -GCAGAATCGGCTATCTTTTGACATTCG------------------TGCTGCACCCCCCC
sequence_ref GGCATCAAAGCGCTTGTCGGCCGCATCGCTGTCCTTGAGCGCGGCCTGCATGAAGGCCAT
sequence_premixa GGCATCAAAGCGCTTGTCGGCCGCATCGCTGTCCTTGAGCGCGGCCTGCATGAATGCCAT
sequence_premixb ------------------------------------------------------------
sequence_premixc ------------------------ATCGCTGTCCTTGAGCGCGGCCTGCATGAAGGCCAT
sequence_premixd CCCAAGAAGGAGCTG-------AACATGCGCTTGTGGATTGCAATGATCATGATGGGCCT
sequence_ref CGCGTCTTTCGGGTGCTCGGTGTTCTTGCCTTCGCCGTACATGTCGATGGCCATGGCGCT
sequence_premixa CGCGTCTTTCGGGTGCTCGGTGTTCTTGCCTTCCCCGTACATGTCAATGGCCATGGGGCT
sequence_premixb ------------------------------------------------------------
sequence_premixc CGCGTCTTTCGGGTGCTCGGTGTTCTTGCCTTCGCCGTACATGTCGATGGCCATGGCGCT
sequence_premixd GACTGGCCTCGGCCAGGCAGCGATCAAG-----ACCGAGCAGATCGATTACAAAAGTGCC
sequence_ref GTAACCCAGTGCCGCCAGATCACGGGCGCGGCGCTTGGCGTAGTCGTTCAGGCCCCACCA
sequence_premixa GTAACCCAATGCCGCCAGATCACAGGCGCGGCGCTTGGCGTAATCCTTCAGGCCCCACCA
sequence_premixb ------------------------------------------------------------
sequence_premixc GTAACCCAGTGCCGCCAGATCACGGGCGCGGCGCTTGGCGTAGTCGTTCAGGCCCCACCA
sequence_premixd G---ACGGTACAAAACTGGTGGGTTACTACGCTTACGACGACGCCGTAAAAGGCCCGCGC
sequence_ref CTCGTGAACCACCAGCACACCGGGGCGCGGGCCTTTTACGGCGTCGTCGTAAGCGTAGTA
sequence_premixa CTCGTGAACCACCAGCACACCGGGGCGCGGGCCTTTTACGGCGTCGTCGTAAGCGTACTA
sequence_premixb ------------------------------------------------------------
sequence_premixc CTCGTGAACCACCAGCACACCGGGGCGCGGGCCTTTTACGGCGTCGTCGTAAGCGTAGTA
sequence_premixd CCCGGTGTGCTGGTGGTTCACGAGTGGTGGGGCCTGAACGACTACGCCAAGCGC------
sequence_ref ACCCACCAGTTTTGTACCG----------TCGGCACTTTTGTAATCGATCTGCTCG----
sequence_premixa ACCCACCAGTTTTGTACCG----------TCGTCACTTTTGTAATCGATCTGCTCG----
sequence_premixb -CCCACCAGTTTTGTACCG----------TCGGCACTTTTGTAATCGATCTGCTCG----
sequence_premixc ACCCACCAGTTTTGTACCG----------TCGGCACTTTTGTAATCGATCTGCTCG----
sequence_premixd -CGCGCCCGTGATCTGGCGGCACTGGGTTACAGCGCCATGGCCATCGACATGTACGGCGA
* *.**.** :* *. ** :*. *.* :* * .***** .** :**
sequence_ref -GTCTTGATCGCTGCCTGGCCGAGGCCAGTCAGGCCCATCATGATCATTGCAATCCA---
sequence_premixa -GTCTAGATCGCTGCCTGGCCGAGGCCAGTCAGGCCCATCATGATCATTGCAATCCA---
sequence_premixb -GTCTTGATCGCTGCCTGGCCGAGGCCAGTCAGGCCCATCATGATCATTGCAATCCA---
sequence_premixc -GTCTTGATCGCTGCCTGGCCGAGGCCAGTCAGGCCCATCATGATCATTGCAATCCA---
sequence_premixd AGGCAAGAACACCGAGCACCCGAAAGACGCGATGGCCTTCATGCAGGCCGCGCTCAAGGA
* *::**:*.* *. . ****.. ..* * * **:*****.: . **..**.*
sequence_ref ---CAAG-CGCATGTTCAGCTCCTTCTTGGGGGGGGGGTGCAGCACGAATGTCAAAAGAT
sequence_premixa ---CGAAGCACATGTTCAGCTCCTTTCTTGGGG---------------------------
sequence_premixb ---CAAG-CGCATGTTCAGCTCCTTCTTGGGGGGGGGGTGCAGCACGAATGTCAAAAGAT
sequence_premixc ---CAAG-CGCATGTTCAGCTCCTTCTTGGGGGGGGGGTGCAGCACGAATGTCAAAAGAT
sequence_premixd CAGCGATGCGGCCGACAAGCGCTTTGATGCCGGGCTTGAGCAATTGAAGAAACAACCGCA
*.* *. . *: .*** * ** * **
sequence_ref AGCCGATTCTGCCGCCTGCGGCGCGCACGACTGTTCAGCGCCGGTTCATCG-CGTGTTCA
sequence_premixa ------------------------------------------------------------
sequence_premixb AGCCGATTCTGCCGCCTGCGGCGCGCACGACTGTTCAGCGCCGGTTCATCG-CGTGTTCA
sequence_premixc AGCCGATTCTGCCGCCTGCGGCGCGCACGACTGTTCAGCGCCGGTTCATCG-CGTGTTCA
sequence_premixd GACCGACCCG-------AAAAAGATTGCAGCGGTGGGTTACTGCTTCGGCGGCAAGATCG
sequence_ref GTCGGGGTTCAGCCCGGCGCG-ATTACTGTTGAGCCGTACCTTGACAGCGTCCCCGAGCG
sequence_premixa ------------------------------------------------------------
sequence_premixb GTCGGGGTTCAGCCCGGCGCG-ATTACTGTTGAGCCGTACCTTGACAGCGTCCCCGAGCG
sequence_premixc GTCGGGGTTCAGCCCGGCGCG-ATTACTGTTGAGCCGTACCTTGACAGCGTCCCCGAGCG
sequence_premixd TGCTGGACGCGGCCCGTCGCGGCGAACCGTT--GCTGGGCGTGGTCAGCTTCCACGG-CG
sequence_ref CAAAAGGAGTCGAAATGTTGAATCTCAACAAGTTTTTCCTGGCCTTGGCTTTTCTGGGTG
sequence_premixa ------------------------------------------------------------
sequence_premixb CAAAAGGAGTCGAAATGTTGAATCTCAACAAGTTTTTCCTGGCCTTGGCTTTTCTGGGTG
sequence_premixc CAAAAGGAGTCGAAATGTTGAATCTCAACAAGTTTTTCCTGGCCTTGGCTTTTCTGGGTG
sequence_premixd CACTG----------------TTCACCAATAGCCCGGCCAAACCGGG---CATCAAAGTG
sequence_ref GCAGTGCGG-CGGCGCAGGCGGGCGATGGCAGGCTTGACGTGGCCCGCATCGAGTTCGGC
sequence_premixa ------------------------------------------------------------
sequence_premixb GCAGTGCGG-CGGCGCAGGCGGGCGATGGCAGGCTTGACGTGGCCCGCATCGAGTTCGGC
sequence_premixc GCAGTGCGG-CGGCGCAGGCGGGCGATGGCAGGCTTGACGTGGCCCGCATCGAGTTCGGC
sequence_premixd CCAATGCTGGTCGAGCATGGTGCCAAGGACAGCATGGTCACACCGGAGAACGTCGCCGCC
sequence_ref AAGACCAGTGAAAGGTTCGACGACGCCAACAGCTGGGGGCATGCGCTTAATGAGCAGGCG
sequence_premixa ------------------------------------------------------------
sequence_premixb AAGACCAGTGAAAGGTTCGACGACGCCAACAGCTGGGGGCATGCGCTTAATGAGCAGGCG
sequence_premixc AAGACCAGTGAAAGGTTCGACGACGCCAACAGCTGGGGGCATGCGCTTAATGAGCAGGCG
sequence_premixd TTCAAGAAGGAAATG---GACGACGCCAAGG--------CAGACTATAAATTCGTCAGC-
sequence_ref CGATCCAATGTGTCGGTGGGGACGCTTTATTCTCCGCCGGTTTACGGCAGTCTGACGGGG
sequence_premixa ------------------------------------------------------------
sequence_premixb CGATCCAATGTGTCGGTGGGGACGCTTTATTCTCCGCCGGTTTACGGCAGTCTGACGGGG
sequence_premixc CGATCCAATGTGTCGGTGGGGACGCTTTATTCTCCGCCGGTTTACGGCAGTCTGACGGGG
sequence_premixd --ATCGACGGCGCCAAACACGGCTTCACCAACCCCGACG----CCGACCGCCTGAG----
sequence_ref ACTCACAATGGCGTGCCTGTCAGCCGCGAAATCCTGCTGGGCAGCTATGATGTGACACAG
sequence_premixa ------------------------------------------------------------
sequence_premixb ACTCACAATGGCGTGCCTGTCAGCCGCGAAATCCTGCTGGGCAGCTATGATGTGACACAG
sequence_premixc ACTCACAATGGCGTGCCTGT----------------------------------------
sequence_premixd -----CCACGGCGAACACGGCGGCCCGGACATQUTE------------------------
sequence_ref CCTGTGCCCGTCAGCGCCCGCCTGTTGAGTACTGAGGCGACGATGTCGTTTCAATCTTTG
sequence_premixa ------------------------------------------------------------
sequence_premixb CCTGTGCCCGTCAGCGCCCGCCTGTTGAGTACTGAGGCGACGATGTCGTTTCAATCTTTG
sequence_premixc ------------------------------------------------------------
sequence_premixd ------------------------------------------------------------
sequence_ref TCTTGAGGCTGTGATTGTGCCTGGGAGAGCTGCATGAAGTTGTTGGTAGTCGAGGATGAA
sequence_premixa ------------------------------------------------------------
sequence_premixb TCTTGAGGCTGTGATTGTGCCTGGGAGAGCTGCATGAAGTTGTTGGTAGTCGAGGATGAA
sequence_premixc ------------------------------------------------------------
sequence_premixd ------------------------------------------------------------
sequence_ref GCGC
sequence_premixa ----
sequence_premixb GCGC
sequence_premixc ----
sequence_premixd ----
clustalw.dnd
(
(
sequence_ref:0.11477,
sequence_premixa:0.19420)
:0.14360,
(
sequence_premixb:0.24242,
sequence_premixc:0.15586)
:0.10268,
sequence_premixd:0.44582);