Did your system run fine before you plugged in the other hard drives?
I didn't notice a problem, but stupidly enough I didn't check. It was inconceivable to me at the time, that the virus could be so sophisticated.
Avast found 4 infected files during boot and all were the "(Letter of Drive):\autorun.inf"
And I am quite impressed that is managed to find the files that so many others didn't. It deleted them all, and continued to boot up only to freeze on a blank black screen. I restarted it again and it loaded windows fine. However the redirecting hyperlinks are still here.
Fortunately, my windows navigation is back... this is more important to me since it is harder to work around.

While typing this Avast came back to a new message saying it has detected a virus in the operating memory. It wants me to restart and run the same scan it just did. I might as well. I'd prefer to stop wiping things over again if this has a chance of working.

I hope to be back shortly. Thanks everyone.